Taking the train is rough, not to mention all the people. If all else fails, another option is New York City Access-A-Ride. You can probably qualify for temporary transportation being in cancer treatment or for as long as needed. You can take it door to door anywhere in NYC, for any reason, 24hrs, and is the same price as the MTA fare, $2.50 each way, and may take another passenger. In some boroughs you can take a black car service instead to certain locations, same fare. The only problem is the application interview time, around 30 days, but maybe it can be expedited. You can call to ask, request an application, if interested.
New York City Transit
Para Transit Division
130 Livingston Street
Brooklyn, NY 11301
1(877) 337-2017